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Summer of HPC: Neural networks in quantum chemistry

Summer of HPC: Neural networks in quantum chemistry. Join our team in Bratislava for the summer of 2021 and gain experience in programming neural networks and their usage in predicting molecular properties.

Summer of HPC: Neural networks in quantum chemistry

Join our team in Bratislava for the summer of 2021 and gain experience in programming neural networks and their usage in predicting molecular properties. PRACE partner countries and students studying at academic institutions in Europe have the opportunity to participate in summer internships at a HPC centre. Summer of HPC is a PRACE programme that offers summer placements at HPC centres across Europe to late-stage undergraduate and master’s students.

The main goal of this project is to investigate ability of NN frameworks to simulate molecular properties, where NN can emulate electronic wavefunction in local atomic orbitals representation as a function of molecular composition and atom positions or other molecular descriptors and representations. Our objective is to apply NN frameworks as predictor of molecular properties (energies, charges on atoms or evidence of hydrogen bonds) based on structural properties of these molecules (atomic positions). Implementation of NN frameworks will be performed using widely adopted TensorFlow library in Python code. For generation of molecular descriptors of chemical systems we apply DScribe library, which can be incorporated as a module directly in Python code. Next to the aforementioned “application part” of the project, we also plan to (in)validate the widely accepted fact, that GPGPUs are superior execution platform for NNs to CPUs.

Late-stage undergraduate and master’s students are invited to apply. Background in quantum-chemistry or physics is needed. We would alsowelcome advanced knowledge of fortran, basic knowledge of MPI, BLAS libraries and other HPC tools. Previous experience in HPC is not required as training will be provided. The most important attribute is a desire to learn, and share experiences with HPC.

Student will have access to the necessary learning material, as well as to our local IBM P775 supercomputer and x86 infiniband clusters.

The summer programme begins on July 1st and ends on August 30th 2021. At the end of the internship students present their projects and may win a prize for the best project!

Applications deadline is April 12th 2021.

Apply now

Training materials

More info about this project

NSCC at the General Assembly of the Slovak Plastics Cluster: Supercomputing Technologies as a Driver of Industrial Innovation 22 Apr - Dňa 10. apríla 2025 sa v Nitre uskutočnilo Valné zhromaždenie Slovenského plastikárskeho klastra (SPK), ktoré bolo zároveň oslavou 16. výročia jeho založenia. Národné superpočítačové centrum sa ako pozvaný hosť aktívne zúčastnilo tohto významného podujatia, zameraného na rozvoj plastikárskeho a strojárskeho priemyslu na Slovensku.
Supercomputers for Business – Article in the SOPK Monthly 17 Apr - V najnovšom čísle mesačníka Slovenskej obchodnej a priemyselnej komory (SOPK) sme predstavili, ako technológie High Performance Computing (HPC) a služby Národného superpočítačového centra pomáhajú slovenským firmám inovovať, urýchliť vývoj a získať konkurenčnú výhodu. Superpočítače už dávno nie sú výlučne nástrojom akademickej sféry – dnes zohrávajú kľúčovú úlohu aj v priemysle, zdravotníctve, energetike či automobilovom sektore. V článku približujeme konkrétne príklady z praxe a ukazujeme, ako sa výpočtový výkon superpočítača využíva pri riešení reálnych výziev firiem.
Spolupráca so SARIO – podpísali sme memorandum o spolupráci 16 Apr - Dňa 16. apríla sme podpísali memorandum o spolupráci so Slovenskou agentúrou pre rozvoj investícií a obchodu (SARIO). Tento krok predstavuje dôležitý míľnik v našom úsilí posilniť prepojenie medzi technologickou infraštruktúrou v oblasti vysokovýkonného počítania (HPC) a potrebami podnikateľského prostredia na Slovensku.