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Summer of HPC: Neural networks in quantum chemistry

Summer of HPC: Neural networks in quantum chemistry. Join our team in Bratislava for the summer of 2021 and gain experience in programming neural networks and their usage in predicting molecular properties.

Summer of HPC: Neural networks in quantum chemistry

Join our team in Bratislava for the summer of 2021 and gain experience in programming neural networks and their usage in predicting molecular properties. PRACE partner countries and students studying at academic institutions in Europe have the opportunity to participate in summer internships at a HPC centre. Summer of HPC is a PRACE programme that offers summer placements at HPC centres across Europe to late-stage undergraduate and master’s students.

The main goal of this project is to investigate ability of NN frameworks to simulate molecular properties, where NN can emulate electronic wavefunction in local atomic orbitals representation as a function of molecular composition and atom positions or other molecular descriptors and representations. Our objective is to apply NN frameworks as predictor of molecular properties (energies, charges on atoms or evidence of hydrogen bonds) based on structural properties of these molecules (atomic positions). Implementation of NN frameworks will be performed using widely adopted TensorFlow library in Python code. For generation of molecular descriptors of chemical systems we apply DScribe library, which can be incorporated as a module directly in Python code. Next to the aforementioned “application part” of the project, we also plan to (in)validate the widely accepted fact, that GPGPUs are superior execution platform for NNs to CPUs.

Late-stage undergraduate and master’s students are invited to apply. Background in quantum-chemistry or physics is needed. We would alsowelcome advanced knowledge of fortran, basic knowledge of MPI, BLAS libraries and other HPC tools. Previous experience in HPC is not required as training will be provided. The most important attribute is a desire to learn, and share experiences with HPC.

Student will have access to the necessary learning material, as well as to our local IBM P775 supercomputer and x86 infiniband clusters.

The summer programme begins on July 1st and ends on August 30th 2021. At the end of the internship students present their projects and may win a prize for the best project!

Applications deadline is April 12th 2021.

Apply now

Training materials

More info about this project

How to Communicate Science and Technology Effectively: Our Team’s Experience 22 Aug - Our team has long been dedicated not only to the development of high-performance computing, but also to the effective communication of the results and opportunities we bring to industry, academia, and the next generation of researchers. We consider this a key part of our work – a modern scientific and technological institution today cannot operate in isolation but must be able to clearly and transparently communicate the value and impact of its activities.
HPC and MATLAB: A Strong Partnership for Accessible Supercomputing 19 Aug - Minulý týždeň sa uskutočnilo zaujímavé pracovné stretnutie, na ktorom sa Lucia Malíčková, zastrešujúca Národné superpočítačové centrum a Národné kompetenčné centrum pre HPC, stretla s Martinom Foltínom zo spoločnosti HUMUSOFT s.r.o., oficiálneho distribútora MathWorks.
Webinar: How a Large Language Model is Created for a Low-Resource Language 14 Aug - Pozývame vás na náš ďalší odborný webinár, ktorý sa zameria na pokroky v oblasti umelej inteligencie pre slovinský jazyk. Podujatie sa uskutoční online v polovici septembra a ponúkne jedinečnú príležitosť nazrieť do zákulisia vývoja veľkého jazykového modelu prispôsobeného pre jazyk s obmedzenými zdrojmi. Prednášajúcim bude Domen Vreš z Univerzity v Ľubľane, Fakulty informatiky a počítačových vied, ktorý sa dlhodobo venuje výskumu v oblasti spracovania prirodzeného jazyka a umelej inteligencie.